Week 9 – Writing the Days Away

Anita M -

Hey guys! In my previous post, I mentioned how we thought the tunicamycin (TM) treatment on my cells was either at too high of a dose or was left on the cells for too long, causing the cells to switch from survival mode (adaptive) to programmed cell death (maladaptive). And there is a way to see if that is really the case: by running a qPCR on our previously prepared cDNA, but with apoptotic genes. If the TM treatment had caused the cells to become maladaptive (like we suspected), our qPCR test would show increased expression of the apoptotic genes. However, we searched our lab inventory and found that our lab did not have apoptotic human genes, so we won’t be able to run the test at this time. If the lab does end up purchasing them in the future, I would be very curious to run this test but until then we can only really speculate on what went wrong. Again, there is unfortunately not enough time left in the project timeframe to repeat my whole experiment, but I do hope to continue working on it through the summer and getting some definitive answers.

So as my project comes to an end, I have mostly been working on writing my research paper and creating my presentation. I’m combining a lot of my previous academic sources with knowledge about cardiac physiology (that I learned from all those readings in the first few weeks) to hopefully create a clearer understanding for my readers. This project can get pretty technical and jargon-y, making it difficult to understand and also very difficult to explain, so I wanted to create lots of diagrams/animations that can help paint a better picture of my project.

Next week will mostly be adding finishing touches to my paper and presentation, as well as practicing presenting! Thanks for reading and I hope to see you all next week!

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    anagha_n
    Hi Anita! I love how you are persevering through these difficulties as you finish up your project. I'm curious, how are you planning to create the diagrams and animations? Are you going to draw and use a specific software?
    camille_bennett
    Hi Anita, I agree that it is fascinating to see your progress despite all the "plot twists". Can you explain what an apoptotic human gene is?
    anita_m
    Hey Anagha, Great question! I plan to create the diagrams and animations through websites (including just using PowerPoint). There's this super amazing one called BioRender (I highly recommend checking it out if you get the chance) that has pre-made molecular biology images. You can modify them to help visualize your concepts to others. It does still take a lot of time, but I think it will really help my audience to understand everything, so it'll be worth it!
    anita_m
    Hi Ms. Bennett, Absolutely, thank you for asking! An apoptotic human gene is a gene that a cell turns on once it decides to engage in "self-death". When a cell first experiences ER stress, it will switch to survival-mode, trying everything in its power to stay alive and keep providing for the body. During this time, apoptotic genes are not turned on. However, prolonged ER stress causes cells to switch from survival-mode to "self-death" mode. Once the cell has made that change, apoptotic genes turn on and signal for the cell to destroy itself.
    tanay_n
    Amazing progress Anita! I'm excited to see your final presentation! What has been the most surprising result of your project so far?
    anita_m
    Hi Tanay, Thanks for asking! I would say I'm most surprised by how much our TM treatment impacted our final results. That being said, I am also extremely curious at just how far off the ideal concentration of TM was from the one we did.

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