Sophia D's Senior Project Blog

Project Title: Determining the Efficacy of Coronary Artery Bypass Graft Surgeries
BASIS Advisor: Kristen Sanders
Internship Location: The Sarver Heart Center
Onsite Mentor: Dr. Steven Goldman, M.D.



Project Abstract

Volumetric muscle loss in skeletal muscles can result from a variety of injuries such as crush injuries, penetrating trauma, blasts, open bone fractures, and surgeries such as cancer removal or procedures for compartment syndrome. It disproportionately affects military personnel, affecting over 75% of soldiers, as a result of blasts and trauma (Testa et al., 2021). Volumetric skeletal muscle loss can lead to functional impairments, significantly impacting a patient’s quality of life and physical capabilities. Regeneration of injured muscle tissue is a complex process, and traditional therapeutic approaches, such as physical therapy, surgical treatment, and prosthetics, often have limited success in restoring full muscle function. Innovative strategies such as immunomodulation and stem cell-based therapies may be able to improve muscle repair and regeneration. For my research project, I aim to study the regenerative processes following skeletal muscle injury and treatment with a cell-based biologic patch using in vivo and in vitro models to answer the question: How does the biologic patch change the skeletal muscle healing process after volumetric muscle loss? I will use immunofluorescence (IF) staining techniques to histologically evaluate and visualize critical markers involved in muscle regeneration: Paired Box 7 (Pax7), a transcription factor and marker for satellite cell muscle progenitor activation, Myosin Heavy Chain (MHC), a protein indicative of mature muscle fibers, and Collagen, an extracellular matrix protein that helps organize tissue architecture and give mechanical properties, as well as inform professionals about disease states like fibrosis. The groups for this study include biologic treated volumetric muscle loss (VML), untreated VML, sham, and normal control to assess the effectiveness of a biologic patch in promoting muscle regeneration. Images will be quantified for their relative fluorescence and length-based area calculation will be used to determine injury size and evaluate regeneration. Statistical significance is determined using a Students T-Test or Analysis of Variation (ANOVA) at P < 0.0. If data fails normality a Mann-Whitney Test is performed. I look forward to learning how to design and implement research protocols, analyze experimental data, and explore how novel therapies could impact the future of muscle injury treatment.

    My Posts:

  • Wrapping It Up!

    Hi everyone! This week was the last official week of my internship at the lab. I would like to thank Dr. Goldman for the opportunity to work at his lab as well as my mentors Adrian and Daniel for guiding me through all my experiments. I also want to thank all my peers in the... Read More

  • The Windy Road of the Research Process

    Hi everyone! This week I worked on my presentation for the senior project showcase as well as hopped on lab meetings on zoom! I have been busy working to put together my presentation for the showcase. While putting the slideshow together, I’ve been able to reflect on the research process– the challenges and setbacks, as... Read More

  • Re-testing!

    Welcome back to my blog! This week I got to present my first images to the lab. To prepare my images to present to the lab, I spent most of Monday getting my images from the hard drive and putting them into a presentation so that I could easily pull up the images at once.... Read More

  • Running my first experiment!

    Hello everyone! Welcome back to my blog. This week, I officially got to run my first experiment by myself! This week I was repeating the same experiment except for the non-stain. The protocol for the experiment is the exact same, except I don’t stain with my primary antibody. I do stain with my secondary antibody... Read More

  • Antibody Testing!

    Hi everyone! This week, I got to start the staining for my senior project, which was very exciting! As I mentioned last week, my Pax7 antibody finally came in, so I was able to begin staining this week. I am doing an immunofluorescence stain, which is an analysis technique where a piece of tissue is... Read More

  • Rounds and JTED Collide

    Hello everyone! This week, my EMT and lab worlds collided, I got to pipette some buffer for my mentor’s macrophage project, and my antibody finally came in (yay!). At this week’s Goldman Rounds, we had a case study where a patient came into the hospital with tachycardia (fast heart rate) and a pneumothorax (popped lung).... Read More

  • Putting the “Re” in “Research”

    Hi everyone, I am back from Spring Break! This week was filled with many zoom meetings, Goldman Rounds, plating cells, and March Madness brackets! I had a slower week this week because my antibodies haven’t come in yet for my project, so I mainly worked on revising my project proposal as well as hopping on... Read More

  • Spring Break!

    I’m out for Spring Break this week, see you all next week! Read More

  • Antibody Hunters: Lab Edition

    Hi everyone, welcome back to my blog! This week at the lab, I spent my time doing training and finding antibodies for my project! It might sound like a slow week, but the training gave me very important insight into how animal surgeries are conducted in accordance with IACUC (Institutional Animal Care and Use Committee).... Read More

  • Cells, Physiology, and UFO noises

    Hello! This week was a different week and was more focused on cell cultures and cardiac anatomy and physiology. I learned how to make cell media and how to culture cells. Cell media is the liquid that the cells are grown in. It is basically a solution that has food and salt for the cells... Read More

  • Surgeries, Scans, and Coffee Breaks

    Hi everyone! This week was filled with rat surgeries, imaging techniques, and going on adventures to coffee shops near the lab! On Monday, we dove right into the action with rat surgeries. My lab is currently training a tech to perform myocardial infarctions (MIs) on rats to help us produce an animal model on which... Read More

  • Getting My Feet Wet

    Hello everyone! This first week at the lab has been filled with lab training, lab meetings, and sitting in on Goldman rounds. During my training, I have learned about personal protective equipment (PPE), types of blood borne pathogens, what to do in case of a chemical spill, and much more. While in lab meetings, I... Read More

  • An Intro to my Project

    Hi there! My name is Sophia DiPonio and I am a senior at BASIS Tucson North. Next year, I am hoping to study neuroscience and minor in Spanish and business. Have you ever wondered how the hearts of patients who suffer heart attacks recover? Heart attacks, or myocardial infarctions (MIs), occur when blood flow is... Read More