Rabia H's Senior Project Blog
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Project Title: Illuminating the Unknown: Revealing Tumors with Fluorescent Imaging BASIS Advisor: Jennalynn Hunnicutt Internship Location: University of Texas San Antonio Science and Engineering Building 1.104C Onsite Mentor: Syed Muhammad Usama |
Project Abstract
Despite the growing knowledge of biological processes within the medical field, many smaller components and molecular systems are yet to be studied. Fluorescent imaging, a non-invasive technique which illuminates such minuscule bodily developments, is used to combat this limitation. Fluorophore dyes occur when electrons in a higher orbital jump down to a lower orbital, emitting light in the process. This is crucial for treating diseases such as detecting the early development of cancer tumors leading to early diagnosis and treatment. Commonly, scientific researchers identify biological molecules by using fluorophore dyes to label them. The performance of fluorescent dyes is heavily influenced by pH, temperature, and concentrations which can vary in different areas of the body. In Dr. Usama’s lab at UTSA, I will experiment with how far the fluorophore dyes will penetrate within the human tissues and study the development of these dyes. Along with shadowing a graduate student, my role will mainly consist of synthesizing, purifying, and characterizing deep-tissue organic fluorescent molecules. Additionally, I’m required to familiarize myself with advanced lab gear and machinery to develop the dyes, improving my lab skills. I hope to improve my collaboration skills through assisting my lab monitor and organization skills through sorting and gathering data, helping me to efficiently analyze them for future research in my career. By understanding how to synthesize dyes that can surpass its common limitations will ensure efficient research of understudied processes and expedite diagnosis for patients, allowing for treatment and a faster recovery.
Week 10: Let’s Mess Around One Last Time
Would it be practical to take a step back and wrap things up in the last week of Senior Project? Probably. Did I do that? Nope! In fact, I may have started new projects. In short, this has been the most exciting and busy week of my senior project. Late introduction, but hello everyone! Welcome... Read More
Week 9: I, too, am Aggregating
Hello everyone! Welcome to week 9 of my blog. This week, to put it short, plans changed. To keep you all on track, I listed out all my tasks for this week: Synthesize and purify 5 mg of my dye (RH1008). Synthesize two different isomers of Zincke salts. Try a new precipitation method for a... Read More
Week 8: Get it in Five
Hey everyone! Welcome to week 8 of my senior project. This week, I’ve been purifying my dye again. For the rest of my two weeks in the lab, my project will focus on developing 5 mg of my dye (RH1008). Before I discuss the steps, I wanted to clarify some of the information I wrote... Read More
Week 7: Scaling Up!
Hello everyone! Welcome back to week 7 of my blog. This week has been pretty light, so hopefully my blog won’t be too complicated. Last week’s absorbance study showed that RH1008 (second dye) successfully aggregated, especially in brine (NaCl). Dr. Usama asked me to make at least 5 mg of the dye in my remaining... Read More
Week 6: The Absorbance Games
Hello everyone! Welcome to week 6 of my blog! After spending the past two weeks purifying my dye, I focused this week on conducting absorbance studies on both my Cy-7 Zincke salt dyes. To recap, we hypothesized that asymmetrical cyanine dyes are less prone to aggregate due to their structure. Since other lab members have... Read More
Week 5: The Purification Process Part 2
Hello everyone! Welcome back to the fourth week of my senior project! This week, I made my second dye with another variation of the Zincke salt. If you remember, I actually hinted at making this Zincke salt in my second blog when Dr. Usama asked me to synthesize a Zincke salt with a specific molecule... Read More
Week 4: The Purification Process
Hello everyone! Welcome back to week 4 of my senior project. Last week, I left off needing to purify the first dye I made. My lab monitor tried a purification method on my dye over the weekend, but it wasn’t enough. I would later purify it on Wednesday and Friday. When I entered the lab... Read More
Week 3: The Salt Needs a Little Shaping… To the Lab!
Hello all! Welcome back to my third blog. This week was exciting as I made my first dye with the Zincke Salt I synthesized last Friday. For some context, why did I make another variation of Zincke salt last Friday? This salt will act as an intermediate for a fluorescent dye. Another professor in the... Read More
Week 2: Show and Tell with Spectrometry
Hello again! Thank you for joining me again for another week. This week, I focused on using advanced machinery and programs to analyze the solutions I’ve made. To recap, last week I made Zincke salts, which are intermediates in the reaction of a fluorescent dye. I continued that project this week by running different Zincke... Read More
Week 1: Who Wants a Salt Bath?
Hello all, I’m Rabia! I’m a senior attending BASIS Shavano and have the privilege of conducting a senior project. My goal is to learn to develop fluorescent dyes and improve their function by preventing common limitations in different environments. Fluorescent imaging is a non-invasive technique used to visualize and quantify biological processes. While synthesizing these... Read More