Isabelle S's Senior Project Blog

Project Title: “CAGE”-ing the methicillin-susceptible Staph (MSSA) Biofilms Away
BASIS Advisor: Tom Talasek
Internship Location: Northern Arizona University
Onsite Mentor: Andy Koppisch



Project Abstract

Recently, more and more pathogens have been becoming antibiotic-resistant such as Candida albicans (C. albicans), Streptococcus mutans (S. mutans) species, and methicillin-resistant Staphylococcus aureus (MRSA)/methicillin-susceptible Staphylococcus aureus (MSSA). Thus, it is necessary to turn to alternative solutions to cure certain diseases or inhibit the further growth of these harmful pathogens. One solution that the lab, a biochemistry lab located at NAU, where I am interning, investigates is the usage of ionic liquids/deep eutectic solvents (IL/DES). Ionic liquids are molten salts known to treat specific antibiotic-resistant pathogen biofilms. My lab aims to use various DES with varying arginine concentrations that consist of choline, gerinate, cinnamic acid, and arginine (CAGE+Arg). Biofilms are a collection of microbial cells enclosed in an extracellular polymeric substance matrix. They are known to survive under many environmental stressors and initiate/progress the growth of dental decay. The overall goal of our project is to develop DES formulations that are effective against microbial biofilms of oral pathogens that contribute to the decline of oral health. To achieve this goal, we plan to incorporate different concentrations of arginine (a molecule reported to affect positive oral health outcomes) into the new DES (which are materials known to be very effective at reducing the viability of microbial biofilms) and investigate which concentration is most effective in eliminating the pathogen.

    My Posts:

  • Week 10 (5/1)

    It is bittersweet to see that senior year and the senior projects are coming to an end soon, but I wanted to thank all my readers and supporters for following me along on this journey! I am so thankful for this community and the opportunity to do what I love and to be able to... Read More

  • Week 9 (4/24)

    Hello and welcome back! Last week, I began and finished my first trial with the ionic liquid containing 1/100th molar equivalent of arginine. While hopes were high that the results would come out as we hoped, unfortunately, it did not. When I went to check the agar plates to collect the colony forming unit (CFU)... Read More

  • Week 8 (4/17)

    Welcome back for another post! May is coming quicker than I anticipated and I am beginning to create my poster and presentation for this project! This is my favorite part of the process because I get to put together all the components of my project and the whole process. I love using diagrams and pictures... Read More

  • Week 7 (4/10)

    Hello and thank you to everyone who continues to read and support my blog! Last week, I finished my second trial with high hopes of seeing better results than the first trial. While I was set back from a slight flooding problem in the lab, I was able to successfully finish the procedure. The results,... Read More

  • Week 6 (4/3)

    Short Recap: Hello and welcome back to my senior blog post! Since my last post, I was able to collect the data from my first trial! However, the results did not show at all what we expected as I will expand on later in this post. Because the results showed to be unusable data, my... Read More

  • Week 5 (3/27)

    What's in store for this week? Last week, I began my first trial of the experiment using the ionic liquid only containing CAGE and no arginine. The first trial is almost done and all there is left to do is to observe the results and log the data. Luckily, the ionic liquids/DES (below) are done... Read More

  • Week 4 (3/20)

    What's in store for this week? Finally back from Spring Break, and one of the three DES I need to test is done and ready for me to use! So, this week I will be running my first trial of the project! With our water purifier still broken, we will have to use another lab's... Read More

  • Week 3 (3/3 – 3/7)

    What’s in store for this week? Most of the preparation for collecting the data is almost complete: making growth media, L.B. agar plates, and DES. The DES that I will be working with will be done by this week so as soon as I have them ready I will begin my first Minimum Biofilm Eradication... Read More

  • Week 2 (2/27)

    What's in store of this week? Going into the second week, I will be frequenting the lab much more. In the lab, I will be investigating the specific equimolar equivalents of arginine to add into each ionic liquid. In past projects, we have used 1:1, 1/100th, and 1/10th molar equivalents of arginine. We plan on... Read More

  • Week 1: Introductory Post 2/21/2024

    Hello, I'm Izzy S., a community-loving, volleyball-playing, and bacteria-killing senior at BASIS Flagstaff. Some of my hobbies are singing, binging Netflix shows, and cuddling with dogs. I have a deep love for science and I always try to connect what I learn in the classroom to what I learn in my biochemistry lab located in... Read More